PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G234900.4
Common NameB456_001G234900, LOC105761054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 562aa    MW: 61042.2 Da    PI: 6.2007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G234900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.6e-16352398455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Gorai.001G234900.4 352 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 398
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-21346417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-16351402No hitNo description
PfamPF000103.4E-13352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-21352411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MNHCVPDFEM EDDYSIPSSS ILNRAKKPSM PEDGIMELLW QNGQVVMQSQ NQRSFKKPSP  60
FKYLDAGQSA LREIRSSSHH QQQQQQQQQQ QQSVTDHLFM QEDEMASWLH NPLSDANFDH  120
DFCADLLYPS SSTAVAPCVT STATTSAPPP PPLGRVPQVS ASAIVPASRP PIPPARRNEL  180
ESTRIQNFGS LSKHKTAARE EQPGPSNSKS VAREVTVVDS SDTPAAAPES GASQAMPWNT  240
EAASGEDNND ACANMSFAAV AYTQSAGVSV GASKDNIATC EATVTSSPGG SSASASAEPT  300
AQKTGPAEDR KRKGREPDDA ECHSEDAEFE SPETKKQSRG SSSTKRSRAA EVHNLSERRR  360
RDRINEKMRA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM LPMMFPQHYM  420
PTMGMGIGMG MVMDMGLSRP MMPFHNVMAG SGLPTPAASA HLDPRFPVPA FHMSPQVPVP  480
DPSRIQPNNQ SDAMLNPLGM QNPNQPRIPS FADPYQQYMG LHQMQLHPPQ CQATAQPSSS  540
KPSTSKGAEN LENHPSGDMA R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.530.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487973060.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942601e-40GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434175.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012434181.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012434189.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012434197.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A0D2PVT80.0A0A0D2PVT8_G
STRINGSolyc09g063010.2.11e-156(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.37e-69phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]